QuasiSeq: Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood

Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with 'QL', 'QLShrink' and 'QLSpline' methods (Lund, Nettleton, McCarthy, and Smyth, 2012).

Version: 1.0-8
Depends: R (≥ 3.1.2)
Imports: edgeR, mgcv, pracma
Suggests: BB, nleqslv
Published: 2015-05-15
Author: Steve Lund [aut], Long Qu [aut, cre, ctb], Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package.), R Core Team [aut] (The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.)
Maintainer: Long Qu <long.qu at wright.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: QuasiSeq results


Reference manual: QuasiSeq.pdf
Package source: QuasiSeq_1.0-8.tar.gz
Windows binaries: r-devel: QuasiSeq_1.0-8.zip, r-release: QuasiSeq_1.0-8.zip, r-oldrel: QuasiSeq_1.0-8.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: QuasiSeq_1.0-8.tgz
OS X Mavericks binaries: r-release: QuasiSeq_1.0-8.tgz
Old sources: QuasiSeq archive