QuasiSeq: Analyzing RNA sequence count tables using quasi-likelihood

This package is used to apply the QL, QLShrink and QLSpline methods (Lund, Nettleton, McCarthy, and Smyth, 2012) to quasi-Poisson or quasi-negative binomial models for identifying differentially expressed genes in RNA-seq data.

Version: 1.0-4
Depends: R (≥ 3.0.2)
Imports: edgeR, Matrix, mgcv
Published: 2014-04-14
Author: Steve Lund and Long Qu
Maintainer: Steve Lund <lundsp at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: NA
Materials: NA
CRAN checks: QuasiSeq results

Downloads:

Reference manual: QuasiSeq.pdf
Package source: QuasiSeq_1.0-4.tar.gz
Windows binaries: r-devel: QuasiSeq_1.0-4.zip, r-release: QuasiSeq_1.0-4.zip, r-oldrel: QuasiSeq_1.0-4.zip
OS X Snow Leopard binaries: r-release: QuasiSeq_1.0-4.tgz, r-oldrel: QuasiSeq_1.0-4.tgz
OS X Mavericks binaries: r-release: QuasiSeq_1.0-4.tgz
Old sources: QuasiSeq archive